Jiayang Shi

I'm currently in my fourth (final) year as a PhD student at Leiden University, located in Leiden, the Netherlands. My supervisors are Daan Pelt and Joost Batenburg.

My research is part of the Marie Curie project, xCTing. I focus on integrating machine learning with denoising and artifact reduction techniques for Computed Tomography (CT) imaging. This encompasses tomographic reconstruction and addressing inverse problems in general.

My PhD journey began in September 2021. Prior to this, I earned my bachelor's degree in 2013 from Hangzhou, China, and completed my master's in 2021 in Karlsruhe, Germany.

Email  /  Google Scholar  /  GitHub  /  LinkedIn

profile photo

Research

Implicit Neural Representations for Robust Joint Sparse-View CT Reconstruction
Jiayang Shi*, Junyi Zhu*, Daan Pelt, Joost Batenburg, Matthew Blaschko
Transactions on Machine Learning Research (TMLR) , 2024  
code / openreview / paper
* = Equal contribution

A novel Bayesian framework for joint reconstruction of multiple objects from sparse-view CT scans using Implicit Neural Representations (INRs) to improve reconstruction quality. By capturing shared patterns across multiple objects with latent variables, our method enhances the reconstruction of each object, increases robustness to noise, and accelerates the learning process.

Self-supervised Resolution Enhancement for Anisotropic Volumes in Edge Illumination X-ray Phase Contrast Micro-Computed Tomography
Jiayang Shi, Louisa Brown, Amir Zekavat, Daan Pelt*, Charlotte Hagen*
Tomography of Materials and Structures , 2024  
code / paper
* = Equal contribution

A self-supervised approach designed for edge illumination X-ray phase contrast micro-CT to enhance the resolution of anisotropic volumes.

SR4ZCT: Self-supervised Through-plane Resolution Enhancement for CT Images with Arbitrary Resolution and Overlap
Jiayang Shi, Daan Pelt, Joost Batenburg
Machine Learning in Medical Imaging (MLMI) in conjunction with MICCAI , 2023  
code / proceeding / paper

A self-supervised approach utilizing off-axis training to improve the resolution of through-plane CT scans. This method is trained using in-plane images and applied to through-plane images, offering flexibility with any resolution and overlap.

Multi-stage Deep Learning Artifact Reduction for Parallel-beam Computed Tomography
Jiayang Shi, Daan Pelt, Joost Batenburg
Journal of Synchrotron Radiation, 2025  
code / arXiv / paper

A artifact reduction method for CT images based on deep learning. Three CNNs reduce artifacts in a subsequent manner, targeting different types of artifacts. This method is seamlessly integrated into existing CT pipelines.

LoDoInd: Introducing A Benchmark Low-dose Industrial CT Dataset and Enhancing Denoising with 2.5D Deep Learning Techniques
Jiayang Shi, Omar Elkilany, Andreas Fischer, Alexander Suppes, Daan Pelt, Joost Batenburg
International Conference on Industrial Computed Tomography (iCT) , 2024  
code / dataset / proceeding / paper

A Benchmark Low-dose Industrial CT Dataset Tailored for Deep Learning: This work introduces a dataset specifically designed for industrial CT applications, emphasizing deep learning approaches. It features a comprehensive analysis comparing the effectiveness and efficiency of 2D, 2.5D, and 3D training methodologies in the context of denoising and image enhancement.

Cross-Domain Graph Level Anomaly Detection
Zhong Li, Sheng Liang, Jiayang Shi, Matthijs van Leeuwen
IEEE Transactions on Knowledge and Data Engineering (TKDE), 2024  
code / paper

Unsupervised cross-domain graph level anomaly detection.

Graph Neural Network based Log Anomaly Detection and Explanation
Zhong Li, Jiayang Shi, Matthijs van Leeuwen
Full paper under review, 2024 / short paper on International Conference on Software Engineering (ICSE), 2024  
code / arXiv / short paper

Graph neural network for log anomaly detection.

Spectral reconstruction and disparity from spatio-spectrally coded light fields via multi-task deep learning
Maximilian Schambach, Jiayang Shi, Michael Heizmann
International Conference on 3D Vision (3DV) , 2021  
code / proceeding / arXiv

A novel method to reconstruct a spectral central view and its aligned disparity map from spatio-spectrally coded light fields using multi-task deep learning.

Teaching Assistant

Computational Imaging and Tomography 2022 spring & 2024 spring & 2025 spring
Statistics for Computer Scientists, 2023 fall
Computer Vision, 2024 fall

Supervised Thesis

Donghang Lyu (master student): Res-Swin: Effective Combination of ResNet and Swin Transformer for LDCT Denoising
Omar Elkilany (master student@TUM & WayGate): Beam Hardening Correction using Implicit Neural Representations